Jupyter for courses
The Jupyter for courses app is a version of the Jupyter app that makes using a custom Python environment simple when hosting or participating in courses.
Python environments can be defined as modules in the project ProjAppl directory. Default resources for the course Python environment can also be defined in the same directory.
Using the app
In the form for launching the application:
- Select the project and reservation used for the course
- Select the course module
- Launch the application
Creating a course environment
The files for course environments (modules) can be created in
www_puhti_modules directory can be created if it does not exist.
The course environment is only visible for the project that it was created for. Note that you may need to Restart Web Server in the Help menu in the web interface if the course environment is not visible in the form after creating the files and selecting the correct project.
Two files are needed for the course modules:
<course>.luafile that defines the module that sets up the Python environment. Only files containing the text
Jupyterwill be visible in the app.
<course>-resources.ymlthat defines the default resources used for Jupyter.
-- Jupyter depends_on("module1","module2") prepend_path("PATH","/path/to/installation/bin") setenv("_COURSE_BASE_NAME","FolderName") -- Relative to the course dir setenv("_COURSE_NOTEBOOK","notebooks/tutorial.ipynb") setenv("_COURSE_GIT_REPO","https://github.com/VeryCoolCode/projectA.git") -- Anything valid for checkout setenv("_COURSE_GIT_REF","") -- lab / notebook / empty (defaults to jupyter) setenv("_COURSE_NOTEBOOK_TYPE","notebook")
cores: 4 time: "02:00:00" partition: "interactive" local_disk: 32 mem: "16GB"